PROJECT PUBLICATIONS: |
- Abdo, Z., Crandall, K.A., and Joyce, P. 2004. Evaluating the performance of likelihood methods for detecting population structure and migration.Molecular Ecology 13: 837-851.
- Abdo, Z., Minin, V., Joyce, P., and Sullivan, J. 2005. Accounting for uncertainty in the tree topology has little effect on the decision theoretic approach to model selection in phylogeny estimation. J. Mol. Bio. Evol. 22(3):691-703.
- Abdo, Z., Schüette, U.M.E, Bent, S.J., Williams, C.J., Forney, L.J., and Joyce, P. 2006. Statistical methods for characterizing diversity in microbial communities by analysis of terminal restriction fragment length polymorphism of 16S rRNA. Environmental Microbiology 8(5): 929-938.
- Fairley, J.P. and Hinds, J.J. 2004. Permeability distribution in an active Great Basin fault zone. Geology 32(9): 825-828.
- Fairley, J.P. and Hinds, J.J. 2004. Field observation of fluid circulation patterns in a normal fault system. Geophysical Research Letters 31: L19502, doi:10.1029/2004GL020812.
- Fairley, J.P. and Nicholson, K.N. 2006. Imaging lateral groundwater flow in the shallow subsurface. Journal of Hydrology 321(1-4): 276-285.
- Fairley, J., Heffner, J., and Hinds, J. 2003. Geostatistical evaluation of permeability in an active fault zone. Geophysical Research Letters 30(18), 1962; doi:10.1029/2003GL018064.
- Gao, F., Zhong, X., La, H.-J., Krone, S., and Forney, L. (pending). A 3-D multispecies biofilm model using energy allocation. Biotechnol. Bioeng.
- Guan, Y. and Krone, S. 2004. WinSSS: Stochastic Spatial Simulator. Bulletin of Ecological Society of America 85(3): 102-104.
- Guan, Y., Fleißner, R., Joyce, P., and Krone, S.M. 2006. Markov Chain Monte Carlo in Small Worlds. Statistics and Computing 16(2): 193-202. doi:10.1007/s11222-006-6966-6.
- Heffner, J. and Fairley, J.P. 2006. Using surface characteristics to infer the permeability structure of an active fault zone. Journal of Sedimentary Geology 184: 255-265.
- Koski, A.K. and Wood, S.A. 2004. The geochemistry of geothermal waters in the Alvord Basin, southeastern Oregon, In Wanty, R.B. and Seal, R.R. III, (Eds.), Water-Rock Interaction. Proceedings of the Eleventh International Symposium on Water-Rock Interaction WRI-11, v. 1. Saratoga Springs, New York, 27 June - 2 July, 2004. A.A. Balkema, Leiden, the Netherlands, pp. 149-152.
- Krone, S.M. 2004. Spatial Models: Stochastic and Deterministic. Mathematical and Computer Modelling 40(3-4): 393-409.
- Labrum, M., Soule, T., Blue, A., and Krone, S.M. 2004. On the Evolution of Structure in Ecological Networks. Proceedings of 4th International Conference on Computational Science (ICCS), Bubak, M., Albada, G.D.v., Sloot, P.M.A., Dongarra, J.J. (Eds.), Kraków, Poland, June 6-9, 2004.
- Minin, V., Abdo, Z., Joyce, P., and Sullivan, J. 2003. Performance-based selection of likelihood models for phylogeny estimation. Systematic Biology 52(5): 674-683.
- Ponciano, J.M., Vandecasteele, F.P.J., Hess, T.F., Forney, L.J., Crawford, R.L., and Joyce, P. 2005. Use of stochastic models to assess the effect of environmental factors on microbial growth. Appl. Envir. Microbiol. 71: 2355-2364.
- Rokyta, D.R., Joyce, P., Caudle, S.B., and Wichman, H.A. 2005. An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus. Nature Genetics 37(4): 441-444.
- Sullivan, J., Abdo, Z., Joyce, P., and Swofford, D.L. 2005. Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation. J. Mol. Biol. Evol. 22(6): 1386-1392.
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